my dh is an rn and wouldn't let me refuse the eye goop since he's a little conservative about med stuff. I thought he was overreacting but he was concerned dd would go blind if there were ANY kind of infections, not just the stds I'd been tested for already anyway and didn't have, (and GBS negative). We are also in NY and with him being licensed here I'm sure he just didn't want to deal with the hassle of a CPS case potentially affecting his career (our city is small enough that word would get around in the medical community - AND he used to work at the hospital where I gave birth).
My sis, however, refused the eye goop for her youngest, also born in NY state, and even though he was delivered by c-section, the hospital called CPS. I don't think much came of it though due to her being c-sected and the fact that her other kid is healthy, happy, etc when they investigated.