If CPS in MA was going to remove children from all homes heated by wood stoves, they would be rounding up half the children in the state. Wood stoves have been super common in MA since the Carter administration. Yurts being tent-like structures, I think you should probably make sure that your fire safety and smoke ventilation are good, but the wood stove, in and of itself, should not give CPS a moment's concern.
Running water is vital, but you have a plan for that. Out here in AZ, I know that CPS likes to see functional toilets. You mention not wanting a composting toilet, but you should probably make sure that you have something that flushes. Also, remember, CPS typically doesn't care where a child *actually* sleeps, they just want to see that children have their own space to sleep in if they choose to use it. And if you're planning to live in a yurt for the long term, it makes good sense to plan for that space from the beginning. Sometime between now and when she turns 18, your dd is going to want to sleep on her own.
Vaccination is just as much an issue for CPS in a yurt as it is in a stick-built house. If they don't care now, they won't care later.