family healthcare - for MD-type care, we go to Landmark Family Practice (Dr. Florini, specifically). but most of the time we see our naturopath (and my mentor) at the Center for Wholism.
dentist - Dr. Eads at Henderson/Walnut Pike/Winslow area. He charges a bit more but he lets parents into the exam room with kids (actually, not a common thing here, especially for most of the pediatric dentists). And he is definitely a family dentist, also not a common thing. He's also not one to push procedures, so if you choose not to do fluoride, he won't get huffy. The dental hygienists... well.... they're a different story ;)
I know little about AP groups and such - we're out of the playgroup age. BABS would be a good resource though. There is a moms meetup group or some such thing, though it isn't exactly AP. They do charge a small monthly fee, if I recall correctly.