Hi Bookwarm,
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I can't see when you posted on this blog, hopefully my answer doesn't come to late.
There is what I would do:
1) Vaccinate myself (which I actually did this year, after a diagnosis of mild dysplasia with a low risk HPV).
Unless you have a chronic disease of other kind I don't see this vaccine affecting your health. Think what is on stake cancer versus some mild inconvenience like rush on the infection site for 3 days (or 1 in a 10000 chances of something more severe when associated with some other chronic disease). I had no other side effects from this vaccine but some mild redness for 3-4 days and I'm happy I took it. It is a vaccine like any other vaccine.
Plus don't forget the vaccine was approved in 2006 and is continuously monitored.
So postpone being with this person for 6 months until you complete your vaccination.
2) Ask him to go to doctor and determine which HPV type he has. DNA tests on men are not DNA approved but are used for research purposes to determine the HPV types in men as well. Tell him to seriously discuss with his doctor what are the possibilities of determining the HPV type. Knowing this will give you piece of mind. You will know what are you dealing with. If he has types 6 or 11 you're lucky. You're protected by the vaccine.
3) Like I said before wait for 6 months. See how his treatment progresses. Ask him if he still has visible warts or if they reappeared after treatment.
The longer a person shows no symptoms (warts) after treatment the higher the chances the virus has gone. You will lower you're chances of getting the virus by waiting a few months.
4) Determine if this man has a good long term relationship potential, if you're compatible with him and if he's worth it. Its you're call here.
Keep in mind you always have 50% chances or more of finding a person with HPV and it is more difficult to put a diagnosis on men as there are no FDA approved tests for asymptomatic persons.
5) Remember warts don't lead to cancer. (just to see the good side of the things)
6) Remember that pregnancy activates the HPV virus in case that is still in your body. So if you consider a pregnancy in the future make sure you test negative on both DNA & Pap test. (a negative DNA test correlated with a negative Pap test = 99% you're clear).
7) Check yourself regularly.
8) Consider all the means to prevent a disease rather than treat. Its easier.
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Hope this helps.
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