Like Adina said, you will almost certainly end up with transvaginal ultrasounds at some point in fertility testing. Do you consider those the same as pelvic exams? (Not trying to pry into your business, but since I don't know exactly why you're opposed to it, I don't know what else you could consider too invasive.)
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I was diagnosed with PCOS, which does NOT require an ultrasound for diagnosis. My diagnosis was based on bloodwork (elevated testosterone and high LH to FSH ratio) and menstrual history (very rarely got spontaneous periods, and knew from charting I almost never ovulated).
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My RE did a hystosonogram as part of his standard infertility work up, to check for uterine anomalies. There, they stick a catheter through your cervix (not too bad), and fill your uterus full of saline (instant menstrual-like cramps - ouch!), and then do a transvaginal ultrasound to look for polyps, fibroids, etc. They also check out the ovaries. In my case, they found I had the classic "pearl necklace" pattern of partly-developed follicles that's often found in PCOS (but you can have PCOS and not have this), but everything else looked good. They did say that this type of test would not have detected endometriosis. They said they could see some fluid that appeared to have leaked out through my fallopian tubes, so they assume at least one tube is open, though technically you need an HSG test to verify that. I also had a transvaginal ultrasound before they would start me on ovulation induction medication. After starting the meds, I had two ultrasounds to check follicle development. Of all of those, the only one that was unpleasant was the hystosonogram - the rest were really not that bad. YMMV, though, based on your personal history and anatomy.
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Honestly, I don't think a normal pelvic exam is going to be diagnostically useful for you. But doctors are pretty much trained to always start there (my RE, or rather his NP, did one before my hystosonogram), so it may be more a matter of fighting the system as opposed to opting out of a medically advisable procedure.