Another thought hit me: DD does Girl Scouting and campfire online. I wonder if it's possible to continue Boy Scouts online as well? It's a great concept, but sometimes the experience depends an awful lot on who is running the show in the area too. That way, he can continue earning his way through, but (at least for now) not have to deal with the peer issues. If he sticks with scouting through Eagle, he'll have scouting peers who are not the pick-on types. I've not met many boys who stick with scouts until teen years who are the bullying sort.
Perhaps not the bullying sort, but they do well at excluding the different. My son stayed wit Scouts until he was 15, and then he had enough.